基因資料
庫
生物資訊資料庫
生物資料庫資料交換標準
生物資料庫
蛋白質資料庫
生物資訊工具
EBI的研究團隊
EBI提供的資源
基因資料庫
DDBJ
DDBJ homepage
The DDBJ release is now available also in XML (交換格式)
EMBL-EBI
EBI Databases
The XEMBL Project the EMBL-GenBank-DDBJ databases in XML (交換格式)
GanBank
IEB HomePage (交換格式)
NCBI HomePage
Untitled (資料模型)
Sanger Centre
The Sanger Institute GFF
The Wellcome Trust Sanger Institute
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蛋白質資料庫
:
PDB
The RCSB Protein Data Bank
PIR
Protein Information Resource Home Page - Protein Sequence Database - iProClass
PRF
PRF HOME PAGE
SWISS-PROT
ExPASy Molecular Biology Server
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生物資訊資料庫
:
核酸資料庫
EBI - Alternative Splicing Database Project - Alternative Exon Database
EBI - Alternative Splicing Database Projec
t
EBI ANALYSIS TOOL
Ensembl Genome Browser
Ensembl
Genome Monitoring Table
Genomes Pages - At the EBI
Mutations
parasite-genome
The EMBL Nucleotide Sequence Database (dbSTS)
The EMBL Nucleotide Sequence Database (EMBL-Ailgn database)
The EMBL Nucleotide Sequence Database
結構資料庫
Dali database
EMBL Dali email server for 3-D protein structure database searches
OCA Advanced Search
The Macromolecular Structure Database
蛋白質資料庫
:
CluSTr
EBI Databases
EBI Research
Gene Ontology @ EBI
Gene Ontology Annotation @ EBI
Home - Integrated Enzyme Database (IntEnz)
InterPro Home
NEWT
Overview
PANDIT Home
Proteome
Swiss-Prot - UniProt
TrEMBL - UniProt
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生物資訊工具
:
3-D結構展示與相似度搜尋
Cn3D Home Page
NCBI Structure - THREADING
Sequin
VAST Search Home Page
各式工具
Applab Homepage
EBI ANALYSIS TOOL
EBI Databases - ArrayExpress - Access Database
EBI Tools - Expression Profiler Home
EBI Tools
Protein Annotators' Assistant (PAA)
Protein Colourer
QuickGO GO Browser
SRS
The EMBL Nucleotide Sequence Database
The XEMBL Project the EMBL-GenBank-DDBJ databases in XML
WEBIN contact details
基因體與圖譜工具
Map Viewer
序列分析
ClustalW
CpG Islands
EBI ANALYSIS TOOL
EMBOSS
embosspepinfo-pepwindow
EMBOSSTranseq
GeneMark
Pairwise Alignment algorithms form
Wise2 Dna Block Aligner
Wise2
WWW-SAPS - Statistical Analysis of Protein Sequences
序列相似度搜尋
NCBI BLAST
提交
微陣列資料提交
EBI Submissions - MIAMExpress
核酸與蛋白質序列提交
EBI Submissions
EMBL Nucleotide Sequence Database Update Form
IMGT-HLA Sequence Database
The EMBL Nucleotide Sequence Database
WEBIN Help Pages
結構資料提交
Autodep
文章詞語搜尋
Cubby
Entrez cross-database search
Entrez-Nucleotide
LinkOut - Linking from PubMed and Other Entrez Databases
NCBI Taxonomy Homepage
PubMed Overview
核酸序列分析
BankIt GenBank Submissions by WWW
CloneFinder
electronic PCR
HomoloGene
NCBI BLAST
ORF Finder
SAGEmap
Sequin
Spidey -- mRNA to genomic alignment
UniGene
VecScreen
相似度比對與相似性搜尋
DNA與蛋白質搜尋
Fasta
NCBI-BLAST2 Vector Searches at the EBI
NCBI-BLAST2
Proteomes and Genomes Fasta
WU-Blast2 blast
特殊DNA搜尋
EuroGeneIndexes WU-Blast2
HGVbase - Human Genome Variation Database
parasite-genome
SNPFASTA
WU-Blast2 Parasites
精確的蛋白質搜尋
EBI Tools Homology & Similarity, DNA and Protein Searches. Completed Genomes and Proteomes
MPsrch
Scanps 2.3
[anedabio.com] Welcome To Aneda
Blast
Fasta
結構分析
Biotech Validation Suite for Protein Structures
Dali database
EBI SSM Home Page
EBI Structural Genomics Target Page
EMBL Dali email server for 3-D protein structure database searches
EMDep - EMD Search Tool
MaxSprout Reconstruction of 3D coordinates from C(alpha) trace
MSD Ligand Chemistry (PDB Ligand Chemistry - Small molecules and Hetgroups)
MSDlite
MSDPro
MSDsite
PQS Form
QUICK PQS
Representative model from NMR ensemble
SRS6
unpubref
蛋白質功能分析
CluSTr
FingerPRINTScan
InterProScan
PPSearch
Pratt
Radar
蛋白質序列分析
http--www.ncbi.nlm.nih.gov-COG-cognitor.html
NCBI BLAST
NCBI DART
Sequin
TaxPlot
資料庫瀏覽與檢索
EBI ANALYSIS TOOL
EBI Tools
EMBL?Sequence?Version?Archive
SRS
SRS6
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生物資料庫資料交換標準
:
AGAVE
Life Code, Inc.
BSML
http--www.bsml.org
-
GFF
The Sanger Institute GFF
其他資料交換標準
XML examples for biology
XML for Molecular Biology as compiled by Paul Gordon
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生物資料庫
:
分子資料庫
核酸序列
dbMHC Home
dbSNP Home Page
NCBI dbGSS
NCBI dbSTS
NCBI Reference Sequence (RefSeq)
NCBI Third Party Annotation Sequence Database
Submit to GenBank
The UniVec Database
UniGene
UniSTS
結構
NCBI Conserved Domain Database
NCBI Structure - MMDB page
NCBI VAST Home Page
蛋白質序列
NCBI Conserved Domain Database
NCBI Reference Sequence (RefSeq)
PROW, Protein Reviews on the Web
分類學
NCBI Taxonomy Homepage
基因表現
Gene Expression Omnibus Home
基因體與圖譜
COG
Entrez-Genome
LocusLink Introduction
Maps of Human-Mouse Homology
MIM Gene map
MIM Morbid map
SKY-M-FISH-CGH Home
文獻資料庫
Entrez-PubMed
OMIM - Online Mendelian Inheritance in Man
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EBI的研究團隊
:
Computational Genomics Group
Computational Genomics Group at the EBI
Ensembl Group
Ensembl
Formerly Robinson Group
Peter Rice Group
Goldman Group
Goldman Group
Macromolecular Structural Database Group
The Macromolecular Structure Database
Microarray Group
EBI Research - Microarray Home
Sequence Database Group
Sequence Database Group
Structural Genomics Group
EBI Research
Thornton Group
Thornton Group
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EBI提供的資源
:
EMBL核酸序列資料庫
The EMBL Nucleotide Sequence Database
分析工具與資料庫的取得
ClustalW
CORBA at EBI
EMBL Dali email server for 3-D protein structure database searches
Fasta
MPsrch
Radiation Hybrid Database
WU-Blast2 blast
巨分子結構資料庫
The Macromolecular Structure Database
The RCSB Protein Data Bank
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參考資料: 莊順淑: 生物資訊概論。中央研究院計算中心通訊,2003。
生物資訊網